Package: CorrectOverloadedPeaks 1.3.6
CorrectOverloadedPeaks: Correct Overloaded Peaks from GC-APCI-MS Data
Analyzes and modifies metabolomics raw data (generated using Gas Chromatography-Atmospheric Pressure Chemical Ionization-Mass Spectrometry) to correct overloaded signals, i.e. ion intensities exceeding detector saturation leading to a cut-off peak. Data in 'xcmsRaw' format are accepted as input and 'mzXML' files can be processed alternatively. Overloaded signals are detected automatically and modified using an Gaussian or an Isotopic-Ratio approach. Quality control plots are generated and corrected data are stored within the original 'xcmsRaw' or 'mzXML' respectively to allow further processing.
Authors:
CorrectOverloadedPeaks_1.3.6.tar.gz
CorrectOverloadedPeaks_1.3.6.zip(r-4.7)CorrectOverloadedPeaks_1.3.6.zip(r-4.6)CorrectOverloadedPeaks_1.3.6.zip(r-4.5)
CorrectOverloadedPeaks_1.3.6.tgz(r-4.6-any)CorrectOverloadedPeaks_1.3.6.tgz(r-4.5-any)
CorrectOverloadedPeaks_1.3.6.tar.gz(r-4.7-any)CorrectOverloadedPeaks_1.3.6.tar.gz(r-4.6-any)
CorrectOverloadedPeaks_1.3.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CorrectOverloadedPeaks/json (API)
| # Install 'CorrectOverloadedPeaks' in R: |
| install.packages('CorrectOverloadedPeaks', repos = c('https://janlisec.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/janlisec/correctoverloadedpeaks/issues
- mzXML_data - MzXML_data.
Last updated from:e9ad0df926. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 163 | ||
| source / vignettes | ERROR | 227 | ||
| linux-release-x86_64 | WARNING | 163 | ||
| macos-release-arm64 | WARNING | 115 | ||
| macos-oldrel-arm64 | WARNING | 115 | ||
| windows-devel | WARNING | 224 | ||
| windows-release | WARNING | 131 | ||
| windows-oldrel | WARNING | 191 | ||
| wasm-release | OK | 132 |
Exports:base64decodebase64encodeCorrectOverloadedPeaksFitGaussPeakFitPeakByIsotopicRatioModelGaussPeakread.mzDataread.mzXMLwrite.mzXML
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| base64decode. | base64decode base64encode |
| Correct Overloaded Peaks from GC-MS data. | CorrectOverloadedPeaks |
| Extrapolate a flat top peak using a Gauss approach. | FitGaussPeak |
| Extrapolate a flat top peak using isotopic ratios. | FitPeakByIsotopicRatio |
| Create and modify parameters of an artificial chromatographic peak. | ModelGaussPeak |
| mzXML_data. | mzXML_data |
| read.mzData. | read.mzData xcmsRawLike-class |
| Read and write standard mzXML files. | new.mzXML read.mzXML write.mzXML |
