{
  "_id": "6a1ef8fbb401979e73417ec8",
  "Package": "CorrectOverloadedPeaks",
  "Type": "Package",
  "Title": "Correct Overloaded Peaks from GC-APCI-MS Data",
  "Version": "1.3.6",
  "Date": "2025-02-24",
  "Authors@R": "person(\"Jan\", \"Lisec\", role = c(\"aut\", \"cre\"), email = \"jan.lisec@bam.de\",\ncomment = c(ORCID = \"0000-0003-1220-2286\"))",
  "Maintainer": "Jan Lisec <jan.lisec@bam.de>",
  "Description": "Analyzes and modifies metabolomics raw data (generated\nusing Gas Chromatography-Atmospheric Pressure Chemical\nIonization-Mass Spectrometry) to correct overloaded signals,\ni.e. ion intensities exceeding detector saturation leading to a\ncut-off peak. Data in 'xcmsRaw' format are accepted as input\nand 'mzXML' files can be processed alternatively. Overloaded\nsignals are detected automatically and modified using an\nGaussian or an Isotopic-Ratio approach. Quality control plots\nare generated and corrected data are stored within the original\n'xcmsRaw' or 'mzXML' respectively to allow further processing.",
  "License": "GPL-3",
  "URL": "https://github.com/janlisec/CorrectOverloadedPeaks",
  "BugReports": "https://github.com/janlisec/CorrectOverloadedPeaks/issues",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Language": "en-US",
  "LazyData": "TRUE",
  "Repository": "https://janlisec.r-universe.dev",
  "Date/Publication": "2025-02-27 09:25:39 UTC",
  "RemoteUrl": "https://github.com/janlisec/correctoverloadedpeaks",
  "RemoteRef": "HEAD",
  "RemoteSha": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-19 05:44:55 UTC",
    "User": "root"
  },
  "Author": "Jan Lisec [aut, cre] (ORCID: <https://orcid.org/0000-0003-1220-2286>)",
  "MD5sum": "54e267f326879f9c1f7ad3cc7e8edb17",
  "_user": "janlisec",
  "_type": "src",
  "_file": "CorrectOverloadedPeaks_1.3.6.tar.gz",
  "_fileid": "cd5e903b64e338db96d5eeaf30e50674f886f15eae82c3de13613884ceed87f0",
  "_filesize": 642822,
  "_sha256": "cd5e903b64e338db96d5eeaf30e50674f886f15eae82c3de13613884ceed87f0",
  "_created": "2026-05-19T05:44:55.000Z",
  "_published": "2026-06-02T15:38:35.205Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79110126588,
      "time": 172,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7075799774"
    },
    {
      "job": 79110126411,
      "time": 170,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7075799323"
    },
    {
      "job": 79110126849,
      "time": 238,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7075813430"
    },
    {
      "job": 79110126563,
      "time": 124,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7075789463"
    },
    {
      "job": 79110126035,
      "time": 231,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7075762299"
    },
    {
      "job": 79110125771,
      "time": 157,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7362518931"
    },
    {
      "job": 79110126743,
      "time": 113,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7075787473"
    },
    {
      "job": 79110126555,
      "time": 122,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7075789371"
    },
    {
      "job": 79110127150,
      "time": 104,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7075785258"
    }
  ],
  "_buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/janlisec/correctoverloadedpeaks",
  "_commit": {
    "id": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
    "author": "janlisec <jan.lisec@bam.de>",
    "committer": "janlisec <jan.lisec@bam.de>",
    "message": "v1.3.6\n\n- ReadMe improved with figures\n- substituted print against message statements\n- allowe LazyData loading\n",
    "time": 1740648339
  },
  "_maintainer": {
    "name": "Jan Lisec",
    "email": "jan.lisec@bam.de",
    "login": "janlisec",
    "orcid": "0000-0003-1220-2286",
    "description": "",
    "uuid": 91542594
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "bitops",
      "role": "Suggests"
    },
    {
      "package": "digest",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "xcms",
      "role": "Suggests"
    },
    {
      "package": "XML",
      "role": "Suggests"
    },
    {
      "package": "xml2",
      "role": "Suggests"
    }
  ],
  "_owner": "janlisec",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "janlisec",
      "count": 10,
      "uuid": 91542594
    },
    {
      "user": "olivroy",
      "count": 1,
      "uuid": 52606734
    }
  ],
  "_userbio": {
    "uuid": 91542594,
    "type": "user",
    "name": "JaLi"
  },
  "_downloads": {
    "count": 291,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CorrectOverloadedPeaks"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/janlisec/correctoverloadedpeaks",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/CorrectOverloadedPeaks.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/janlisec/correctoverloadedpeaks",
  "_realowner": "janlisec",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.2.13",
      "date": "2016-07-22"
    },
    {
      "version": "1.2.14",
      "date": "2016-08-30"
    },
    {
      "version": "1.2.15",
      "date": "2018-07-10"
    },
    {
      "version": "1.2.16",
      "date": "2019-05-15"
    },
    {
      "version": "1.2.17",
      "date": "2019-07-23"
    },
    {
      "version": "1.3.3",
      "date": "2023-09-08"
    },
    {
      "version": "1.3.5",
      "date": "2025-02-27"
    }
  ],
  "_exports": [
    "base64decode",
    "base64encode",
    "CorrectOverloadedPeaks",
    "FitGaussPeak",
    "FitPeakByIsotopicRatio",
    "ModelGaussPeak",
    "read.mzData",
    "read.mzXML",
    "write.mzXML"
  ],
  "_datasets": [
    {
      "name": "mzXML_data",
      "title": "mzXML_data.",
      "object": "mzXML_data",
      "class": [
        "mzXML"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "base64decode",
      "title": "base64decode.",
      "topics": [
        "base64decode",
        "base64encode"
      ]
    },
    {
      "page": "CorrectOverloadedPeaks",
      "title": "Correct Overloaded Peaks from GC-MS data.",
      "topics": [
        "CorrectOverloadedPeaks"
      ]
    },
    {
      "page": "FitGaussPeak",
      "title": "Extrapolate a flat top peak using a Gauss approach.",
      "topics": [
        "FitGaussPeak"
      ]
    },
    {
      "page": "FitPeakByIsotopicRatio",
      "title": "Extrapolate a flat top peak using isotopic ratios.",
      "topics": [
        "FitPeakByIsotopicRatio"
      ]
    },
    {
      "page": "ModelGaussPeak",
      "title": "Create and modify parameters of an artificial chromatographic peak.",
      "topics": [
        "ModelGaussPeak"
      ]
    },
    {
      "page": "mzXML_data",
      "title": "mzXML_data.",
      "topics": [
        "mzXML_data"
      ]
    },
    {
      "page": "read.mzData",
      "title": "read.mzData.",
      "topics": [
        "read.mzData",
        "xcmsRawLike-class"
      ]
    },
    {
      "page": "mzXML",
      "title": "Read and write standard mzXML files.",
      "topics": [
        "new.mzXML",
        "read.mzXML",
        "write.mzXML"
      ]
    }
  ],
  "_readme": "https://github.com/janlisec/correctoverloadedpeaks/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 3.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "correctoverloadedpeaks",
  "_universes": [
    "janlisec"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.6",
      "date": "2026-05-19T05:47:37.000Z",
      "distro": "noble",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "4da3adb1307c79d9fa552937a023423decc4613544f0111e0f66fd2720a5d7e6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3.6",
      "date": "2026-05-19T05:47:34.000Z",
      "distro": "noble",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "c3335347767f5884c17b8d1e23770ea113dc5afae0a8abb4543f6f6b37620497",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.6",
      "date": "2026-05-19T05:48:56.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "a17bab295a6b8fb5ca34ff8818b7cba8f1d7891ce9dc56e6c4d60e1e1629da3a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3.6",
      "date": "2026-05-19T05:46:52.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "7a94c32c9041f71db328839cf6d53c3f010510f89124941f73f9467294c1bfbc",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.6",
      "date": "2026-05-19T05:46:38.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "5663632aec0ad491cc6c92c72bf102eaa7f76dc2d7439cd7b046e213c0ba6b67",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3.6",
      "date": "2026-05-19T05:46:42.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "23d184cabd55baf283a85740c8474f13798a7bb36e6bf15478e949af4e1ddf41",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.3.6",
      "date": "2026-05-19T05:46:27.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "3623dc65fa8046456c5f1a7a49848f0ee23ce0cd478706c9627554916a74d607",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.6",
      "date": "2026-06-02T15:38:12.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "757f11af6bac93672f27e39005c1cd85508d999f39f15a624b5eb69e40c6135b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/26023148093"
    }
  ]
}