{
  "_id": "6a33d2223efcd9bda43b41c4",
  "Package": "CorrectOverloadedPeaks",
  "Type": "Package",
  "Title": "Correct Overloaded Peaks from GC-APCI-MS Data",
  "Version": "1.3.6",
  "Date": "2025-02-24",
  "Authors@R": "person(\"Jan\", \"Lisec\", role = c(\"aut\", \"cre\"), email = \"jan.lisec@bam.de\",\ncomment = c(ORCID = \"0000-0003-1220-2286\"))",
  "Maintainer": "Jan Lisec <jan.lisec@bam.de>",
  "Description": "Analyzes and modifies metabolomics raw data (generated\nusing Gas Chromatography-Atmospheric Pressure Chemical\nIonization-Mass Spectrometry) to correct overloaded signals,\ni.e. ion intensities exceeding detector saturation leading to a\ncut-off peak. Data in 'xcmsRaw' format are accepted as input\nand 'mzXML' files can be processed alternatively. Overloaded\nsignals are detected automatically and modified using an\nGaussian or an Isotopic-Ratio approach. Quality control plots\nare generated and corrected data are stored within the original\n'xcmsRaw' or 'mzXML' respectively to allow further processing.",
  "License": "GPL-3",
  "URL": "https://github.com/janlisec/CorrectOverloadedPeaks",
  "BugReports": "https://github.com/janlisec/CorrectOverloadedPeaks/issues",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Language": "en-US",
  "LazyData": "TRUE",
  "Repository": "https://janlisec.r-universe.dev",
  "Date/Publication": "2025-02-27 09:25:39 UTC",
  "RemoteUrl": "https://github.com/janlisec/correctoverloadedpeaks",
  "RemoteRef": "HEAD",
  "RemoteSha": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-18 11:06:01 UTC",
    "User": "root"
  },
  "Author": "Jan Lisec [aut, cre] (ORCID: <https://orcid.org/0000-0003-1220-2286>)",
  "MD5sum": "3fe8314f91a78f15451e6b9f888236f5",
  "_user": "janlisec",
  "_type": "src",
  "_file": "CorrectOverloadedPeaks_1.3.6.tar.gz",
  "_fileid": "06dfc04b90f4cb2a8c2ff8c74295cd5709cf80878b31feb4d7c09cfee37f57f1",
  "_filesize": 648080,
  "_sha256": "06dfc04b90f4cb2a8c2ff8c74295cd5709cf80878b31feb4d7c09cfee37f57f1",
  "_created": "2026-06-18T11:06:01.000Z",
  "_published": "2026-06-18T11:10:26.606Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 82115170021,
      "time": 163,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7721586378"
    },
    {
      "job": 82115169998,
      "time": 163,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7721586239"
    },
    {
      "job": 82115170007,
      "time": 115,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7721569996"
    },
    {
      "job": 82115170058,
      "time": 115,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7721570133"
    },
    {
      "job": 82114515303,
      "time": 227,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7721531182"
    },
    {
      "job": 82115170013,
      "time": 132,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7721576121"
    },
    {
      "job": 82115169992,
      "time": 224,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7721609349"
    },
    {
      "job": 82115170016,
      "time": 191,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7721596256"
    },
    {
      "job": 82115170112,
      "time": 131,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7721575592"
    }
  ],
  "_buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/janlisec/correctoverloadedpeaks",
  "_commit": {
    "id": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
    "author": "janlisec <jan.lisec@bam.de>",
    "committer": "janlisec <jan.lisec@bam.de>",
    "message": "v1.3.6\n\n- ReadMe improved with figures\n- substituted print against message statements\n- allowe LazyData loading\n",
    "time": 1740648339
  },
  "_maintainer": {
    "name": "Jan Lisec",
    "email": "jan.lisec@bam.de",
    "login": "janlisec",
    "orcid": "0000-0003-1220-2286",
    "description": "",
    "uuid": 91542594
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "bitops",
      "role": "Suggests"
    },
    {
      "package": "digest",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "xcms",
      "role": "Suggests"
    },
    {
      "package": "XML",
      "role": "Suggests"
    },
    {
      "package": "xml2",
      "role": "Suggests"
    }
  ],
  "_owner": "janlisec",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "janlisec",
      "count": 10,
      "uuid": 91542594
    },
    {
      "user": "olivroy",
      "count": 1,
      "uuid": 52606734
    }
  ],
  "_userbio": {
    "uuid": 91542594,
    "type": "user",
    "name": "JaLi",
    "followers": 3
  },
  "_downloads": {
    "count": 275,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CorrectOverloadedPeaks"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/janlisec/correctoverloadedpeaks",
  "_searchresults": 6,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/CorrectOverloadedPeaks.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/janlisec/correctoverloadedpeaks",
  "_realowner": "janlisec",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.2.13",
      "date": "2016-07-22"
    },
    {
      "version": "1.2.14",
      "date": "2016-08-30"
    },
    {
      "version": "1.2.15",
      "date": "2018-07-10"
    },
    {
      "version": "1.2.16",
      "date": "2019-05-15"
    },
    {
      "version": "1.2.17",
      "date": "2019-07-23"
    },
    {
      "version": "1.3.3",
      "date": "2023-09-08"
    },
    {
      "version": "1.3.5",
      "date": "2025-02-27"
    }
  ],
  "_exports": [
    "base64decode",
    "base64encode",
    "CorrectOverloadedPeaks",
    "FitGaussPeak",
    "FitPeakByIsotopicRatio",
    "ModelGaussPeak",
    "read.mzData",
    "read.mzXML",
    "write.mzXML"
  ],
  "_datasets": [
    {
      "name": "mzXML_data",
      "title": "mzXML_data.",
      "object": "mzXML_data",
      "class": [
        "mzXML"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "base64decode",
      "title": "base64decode.",
      "topics": [
        "base64decode",
        "base64encode"
      ]
    },
    {
      "page": "CorrectOverloadedPeaks",
      "title": "Correct Overloaded Peaks from GC-MS data.",
      "topics": [
        "CorrectOverloadedPeaks"
      ]
    },
    {
      "page": "FitGaussPeak",
      "title": "Extrapolate a flat top peak using a Gauss approach.",
      "topics": [
        "FitGaussPeak"
      ]
    },
    {
      "page": "FitPeakByIsotopicRatio",
      "title": "Extrapolate a flat top peak using isotopic ratios.",
      "topics": [
        "FitPeakByIsotopicRatio"
      ]
    },
    {
      "page": "ModelGaussPeak",
      "title": "Create and modify parameters of an artificial chromatographic peak.",
      "topics": [
        "ModelGaussPeak"
      ]
    },
    {
      "page": "mzXML_data",
      "title": "mzXML_data.",
      "topics": [
        "mzXML_data"
      ]
    },
    {
      "page": "read.mzData",
      "title": "read.mzData.",
      "topics": [
        "read.mzData",
        "xcmsRawLike-class"
      ]
    },
    {
      "page": "mzXML",
      "title": "Read and write standard mzXML files.",
      "topics": [
        "new.mzXML",
        "read.mzXML",
        "write.mzXML"
      ]
    }
  ],
  "_readme": "https://github.com/janlisec/correctoverloadedpeaks/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 3.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "correctoverloadedpeaks",
  "_universes": [
    "janlisec"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.6",
      "date": "2026-06-18T11:08:37.000Z",
      "distro": "noble",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "5ab6033b8d0462efe200540f5cb0a81803f2db624761badc0ea8b0a9f8459a3f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3.6",
      "date": "2026-06-18T11:08:37.000Z",
      "distro": "noble",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "b74334fda6ef476ee1b3d3483ff0b5efc67cbe7f8999eda376b2eaab7d1e2b7a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.6",
      "date": "2026-06-18T11:07:46.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "1a035bed526742be158b59ad4131cf9099ac077bdd52e6b322f50e38332c9e36",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3.6",
      "date": "2026-06-18T11:07:52.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "f785da7583bc1ab29f46a9d937b1a75c3d41d72503edfcd186a66d29ca54ef05",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.6",
      "date": "2026-06-18T11:08:29.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "fdd9d5f0649d1b082d3ea4cdcaf72f3540e170e19fcd380bf489fa3cc955a0af",
      "status": "success",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.6",
      "date": "2026-06-18T11:09:29.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "9555e7f3b09257a38b76b2c688ab27f6115ae94aee9f29c00f2be5a407f9d250",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3.6",
      "date": "2026-06-18T11:08:57.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "74c42456b7898f7c22c071edbd13c99ed1fcae72bbb2dbd7919cc3889e54e17b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.3.6",
      "date": "2026-06-18T11:07:55.000Z",
      "commit": "e9ad0df92658b8c2d1c1fbe3079647e338bc61a9",
      "fileid": "19fad512d1d87eae2d8664476d813b7474e59094bf7ae5cc3d6d954024654535",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/27754979781"
    }
  ]
}