Package: IsoCor 0.2.9

IsoCor: Analyze Isotope Ratios in a 'Shiny'-App

Analyzing Inductively Coupled Plasma - Mass Spectrometry (ICP-MS) measurement data to evaluate isotope ratios (IRs) is a complex process. The 'IsoCor' package facilitates this process and renders it reproducible by providing a function to run a 'Shiny'-App locally in any web browser. In this App the user can upload data files of various formats, select ion traces, apply peak detection and perform calculation of IRs and delta values. Results are provided as figures and tables and can be exported. The App, therefore, facilitates data processing of ICP-MS experiments to quickly obtain optimal processing parameters compared to traditional 'Excel' worksheet based approaches. A more detailed description can be found in the corresponding article <doi:10.1039/D2JA00208F>. The most recent version of 'IsoCor' can be tested online at <https://apps.bam.de/shn00/IsoCor/>.

Authors:Jan Lisec [aut, cre]

IsoCor_0.2.9.tar.gz
IsoCor_0.2.9.zip(r-4.5)IsoCor_0.2.9.zip(r-4.4)IsoCor_0.2.9.zip(r-4.3)
IsoCor_0.2.9.tgz(r-4.4-any)IsoCor_0.2.9.tgz(r-4.3-any)
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IsoCor.pdf |IsoCor.html
IsoCor/json (API)

# Install 'IsoCor' in R:
install.packages('IsoCor', repos = c('https://janlisec.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/janlisec/isocor/issues

Datasets:

On CRAN:

5 exports 0.93 score 52 dependencies 2 scripts 244 downloads

Last updated 7 days agofrom:9138fdda85. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 11 2024
R-4.5-winNOTESep 11 2024
R-4.5-linuxNOTESep 11 2024
R-4.4-winNOTESep 11 2024
R-4.4-macNOTESep 11 2024
R-4.3-winNOTESep 11 2024
R-4.3-macNOTESep 11 2024

Exports:find_peak_boundariesic_appiso_ratiomass_biasread_raw_data

Dependencies:attemptbase64encbslibcachemclicommonmarkconfigcrayoncrosstalkdigestDTevaluatefastmapfontawesomefsgluegolemherehighrhtmltoolshtmlwidgetshttpuvjquerylibjsonliteknitrlaterlazyevallifecyclemagrittrMALDIquantmarkdownmemoisemimeplyrpromisesR6rappdirsRcpprlangrmarkdownrprojrootsassshinyshinyalertshinyjssourcetoolstinytexuuidwithrxfunxtableyaml

Readme and manuals

Help Manual

Help pageTopics
find_peak_boundariesfind_peak_boundaries
ic_app.ic_app
iso_ratioiso_ratio
isotopes.isotopes
mass_bias.mass_bias
read_raw_dataread_raw_data
testdata.testdata
testdata_IDMS.testdata_IDMS