Package: CorMID 0.2.1

CorMID: Correct Mass Isotopologue Distribution Vectors

In metabolic flux experiments tracer molecules (often glucose containing labelled carbon) are incorporated in compounds measured using mass spectrometry. The mass isotopologue distributions of these compounds needs to be corrected for natural abundance of labelled carbon and other effects, which are specific on the compound and ionization technique applied. This package provides functions to correct such effects in gas chromatography atmospheric pressure chemical ionization mass spectrometry analyses.

Authors:Jan Lisec [aut, cre]

CorMID_0.2.1.tar.gz
CorMID_0.2.1.zip(r-4.5)CorMID_0.2.1.zip(r-4.4)CorMID_0.2.1.zip(r-4.3)
CorMID_0.2.1.tgz(r-4.4-any)CorMID_0.2.1.tgz(r-4.3-any)
CorMID_0.2.1.tar.gz(r-4.5-noble)CorMID_0.2.1.tar.gz(r-4.4-noble)
CorMID_0.2.1.tgz(r-4.4-emscripten)CorMID_0.2.1.tgz(r-4.3-emscripten)
CorMID.pdf |CorMID.html✨
CorMID/json (API)

# Install 'CorMID' in R:
install.packages('CorMID', repos = c('https://janlisec.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/janlisec/cormid/issues

Datasets:
  • isotopes - A data frame containing isotope information.
  • known_frags - The known fragments and their relative position to '[M+H]'.
  • precalc_idx - Pre-calculated index matrices to speed up calculations in function 'getMID'.
  • prep - Example data as used in function 'CorMID'.

On CRAN:

4.48 score 1 packages 3 scripts 264 downloads 5 exports 0 dependencies

Last updated 1 months agofrom:ecf01bfef9. Checks:OK: 1 NOTE: 5 ERROR: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winNOTENov 14 2024
R-4.5-linuxNOTENov 14 2024
R-4.4-winNOTENov 14 2024
R-4.4-macNOTENov 14 2024
R-4.3-winNOTENov 14 2024
R-4.3-macERRORNov 14 2024

Exports:CalcTheoreticalMDVCorMIDCountChemicalElementsgetMIDrecMID

Dependencies:

CorMID

Rendered fromCorMID.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2023-08-09
Started: 2022-03-25