Package: CorMID 0.3.1
CorMID: Correct Mass Isotopologue Distribution Vectors
In metabolic flux experiments tracer molecules (often glucose containing labelled carbon) are incorporated in compounds measured using mass spectrometry. The mass isotopologue distributions of these compounds needs to be corrected for natural abundance of labelled carbon and other effects, which are specific on the compound and ionization technique applied. This package provides functions to correct such effects in gas chromatography atmospheric pressure chemical ionization mass spectrometry analyses.
Authors:
CorMID_0.3.1.tar.gz
CorMID_0.3.1.zip(r-4.7)CorMID_0.3.1.zip(r-4.6)CorMID_0.3.1.zip(r-4.5)
CorMID_0.3.1.tgz(r-4.6-x86_64)CorMID_0.3.1.tgz(r-4.6-arm64)CorMID_0.3.1.tgz(r-4.5-x86_64)CorMID_0.3.1.tgz(r-4.5-arm64)
CorMID_0.3.1.tar.gz(r-4.7-arm64)CorMID_0.3.1.tar.gz(r-4.7-x86_64)CorMID_0.3.1.tar.gz(r-4.6-arm64)CorMID_0.3.1.tar.gz(r-4.6-x86_64)
CorMID_0.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CorMID/json (API)
| # Install 'CorMID' in R: |
| install.packages('CorMID', repos = c('https://janlisec.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/janlisec/cormid/issues
- isotopes - A data frame containing isotope information.
- known_frags - The known fragments and their relative position to '[M+H]'.
- precalc_idx - Pre-calculated index matrices to speed up calculations in function 'getMID'.
- prep - Example data as used in function 'CorMID'.
Last updated from:4dc1bb256e. Checks:11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 154 | ||
| linux-devel-x86_64 | NOTE | 123 | ||
| source / vignettes | OK | 182 | ||
| linux-release-arm64 | NOTE | 118 | ||
| linux-release-x86_64 | NOTE | 119 | ||
| macos-release-arm64 | NOTE | 97 | ||
| macos-release-x86_64 | NOTE | 177 | ||
| macos-oldrel-arm64 | NOTE | 86 | ||
| macos-oldrel-x86_64 | NOTE | 174 | ||
| windows-devel | NOTE | 111 | ||
| windows-release | NOTE | 88 | ||
| windows-oldrel | NOTE | 94 | ||
| wasm-release | OK | 109 |
Exports:CalcTheoreticalMDVCorMIDCountChemicalElementsgetMIDrecMID
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| CalcTheoreticalMDV. | CalcTheoreticalMDV |
| CorMID. | CorMID plot.CorMID print.CorMID |
| CountChemicalElements. | CountChemicalElements |
| getMID. | getMID |
| A data frame containing isotope information. | isotopes |
| The known fragments and their relative position to '[M+H]'. | known_frags |
| Pre-calculated index matrices to speed up calculations in function 'getMID'. | precalc_idx |
| Example data as used in function 'CorMID'. | prep |
| recMID. | plot.recMID recMID |
