{
  "_id": "6a631facd3420cf5dfdb76ce",
  "Type": "Package",
  "Package": "HiResTEC",
  "Title": "Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data",
  "Version": "0.63.2",
  "Date": "2025-09-17",
  "Authors@R": "c(\nperson(\"Jan\", \"Lisec\", , \"jan.lisec@bam.de\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1220-2286\")),\nperson(\"Friederike\", \"Hoffmann\", , \"Friederike.Hoffmann@charite.de\", role = \"aut\")\n)",
  "Maintainer": "Jan Lisec <jan.lisec@bam.de>",
  "Description": "Identifying labeled compounds in a 13C-tracer experiment\nin non-targeted fashion is a cumbersome process. This package\nfacilitates such type of analyses by providing high level\nquality control plots, deconvoluting and evaluating spectra,\nand performing a multitude of tests in an automatic fashion.\nThe main idea is to use changing intensity ratios of ion pairs\nfrom a peak list, i.e. generated with 'xcms' as candidates and\nevaluate those against base peak chromatograms and spectra\ninformation within the raw measurement data automatically. The\nfunctionality is described in Hoffmann et al. (2018)\n<doi:10.1021/acs.analchem.8b00356>.",
  "License": "GPL-3",
  "URL": "https://github.com/janlisec/HiResTEC,\nhttps://janlisec.github.io/HiResTEC/",
  "biocViews": "",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "LazyData": "TRUE",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Repository": "https://janlisec.r-universe.dev",
  "Date/Publication": "2025-09-17 14:47:12 UTC",
  "RemoteUrl": "https://github.com/janlisec/hirestec",
  "RemoteRef": "HEAD",
  "RemoteSha": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-24 07:02:06 UTC",
    "User": "root"
  },
  "Author": "Jan Lisec [aut, cre] (ORCID: <https://orcid.org/0000-0003-1220-2286>),\nFriederike Hoffmann [aut]",
  "_user": "janlisec",
  "_type": "src",
  "_file": "HiResTEC_0.63.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/9221f13be1c3a4142a5e777f34cd0b18b6c570780b200d9fa32223687ae66bc3",
  "_filesize": 3362625,
  "_sha256": "9221f13be1c3a4142a5e777f34cd0b18b6c570780b200d9fa32223687ae66bc3",
  "_expires": "2026-11-01T08:17:46.000Z",
  "_created": "2026-07-24T07:02:06.000Z",
  "_published": "2026-07-24T08:17:48.229Z",
  "_jobs": [
    {
      "job": 89421096456,
      "time": 112,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8589204260"
    },
    {
      "job": 89421096440,
      "time": 143,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8589215026"
    },
    {
      "job": 89421096441,
      "time": 119,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8589206354"
    },
    {
      "job": 89421096492,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8589214410"
    },
    {
      "job": 89421096423,
      "time": 104,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8590713267"
    },
    {
      "job": 89421096459,
      "time": 192,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8590771483"
    },
    {
      "job": 89421096427,
      "time": 92,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8590731151"
    },
    {
      "job": 89421096415,
      "time": 166,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8590688979"
    },
    {
      "job": 89420566806,
      "time": 177,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8589161680"
    },
    {
      "job": 89421096379,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8589203856"
    },
    {
      "job": 89421096430,
      "time": 82,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8589193395"
    },
    {
      "job": 89421096464,
      "time": 85,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8589194288"
    },
    {
      "job": 89421096626,
      "time": 93,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8589196872"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332",
  "_status": "success",
  "_upstream": "https://github.com/janlisec/hirestec",
  "_commit": {
    "id": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
    "author": "janlisec <jan.lisec@bam.de>",
    "committer": "janlisec <jan.lisec@bam.de>",
    "message": "Merge branch 'main' of https://github.com/janlisec/HiResTEC\n",
    "time": 1758120432
  },
  "_maintainer": {
    "name": "Jan Lisec",
    "email": "jan.lisec@bam.de",
    "login": "janlisec",
    "orcid": "0000-0003-1220-2286",
    "description": "",
    "uuid": 91542594
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "CorrectOverloadedPeaks",
      "version": ">= 1.3.5",
      "role": "Imports"
    },
    {
      "package": "beeswarm",
      "role": "Suggests"
    },
    {
      "package": "CorMID",
      "role": "Suggests"
    },
    {
      "package": "InterpretMSSpectrum",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "openxlsx",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "janlisec",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-38",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "janlisec",
      "count": 23,
      "uuid": 91542594
    }
  ],
  "_userbio": {
    "uuid": 91542594,
    "type": "user",
    "name": "JaLi",
    "followers": 3
  },
  "_downloads": {
    "count": 252,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/HiResTEC"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/janlisec/hirestec",
  "_pkgdown": "https://janlisec.github.io/HiResTEC/",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/HiResTEC.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/janlisec/hirestec",
  "_realowner": "janlisec",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.52",
      "date": "2018-05-07"
    },
    {
      "version": "0.54",
      "date": "2018-08-07"
    },
    {
      "version": "0.58",
      "date": "2019-06-13"
    },
    {
      "version": "0.59",
      "date": "2019-06-18"
    },
    {
      "version": "0.62",
      "date": "2023-02-22"
    },
    {
      "version": "0.62.3",
      "date": "2024-02-26"
    },
    {
      "version": "0.63.1",
      "date": "2025-02-27"
    }
  ],
  "_exports": [
    "DeconvoluteSpectrum",
    "EvaluateCandidateListAgainstRawData",
    "EvaluatePairsFromXCMSSet",
    "GenerateCandXLSX",
    "GenerateQCPlots",
    "getMultipleBPC",
    "plotBPC",
    "plotMID"
  ],
  "_datasets": [
    {
      "name": "mz_shift_corrector",
      "title": "Different example data files to be used in the help section of 'HiResTEC' functions.",
      "object": "mz_shift_corrector",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "raw",
      "title": "Different example data files to be used in the help section of 'HiResTEC' functions.",
      "object": "raw",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "res_list",
      "title": "Different example data files to be used in the help section of 'HiResTEC' functions.",
      "object": "res_list",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "sam",
      "title": "Different example data files to be used in the help section of 'HiResTEC' functions.",
      "object": "sam",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "Group",
        "TP",
        "Rep",
        "snames",
        "class",
        "cols",
        "pchs"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    },
    {
      "name": "xcms_cand",
      "title": "Different example data files to be used in the help section of 'HiResTEC' functions.",
      "object": "xcms_cand",
      "class": [
        "data.frame"
      ],
      "fields": [
        "peak_idx",
        "rt",
        "mz1",
        "mz2",
        "P",
        "dR",
        "dRT",
        "I1_0_G1",
        "I1_10_G1",
        "I1_1440_G1",
        "I1_0_G2",
        "I1_10_G2",
        "I1_1440_G2",
        "I2_0_G1",
        "I2_10_G1",
        "I2_1440_G1",
        "I2_0_G2",
        "I2_10_G2",
        "I2_1440_G2"
      ],
      "rows": 72,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "DeconvoluteSpectrum",
      "title": "Deconvolute a Mass Spectrum from a list of raw data files.",
      "topics": [
        "DeconvoluteSpectrum"
      ]
    },
    {
      "page": "EvaluateCandidateListAgainstRawData",
      "title": "Evaluate m/z pairs against raw data.",
      "topics": [
        "EvaluateCandidateListAgainstRawData"
      ]
    },
    {
      "page": "EvaluatePairsFromXCMSSet",
      "title": "Identify and evaluate mz pairs from a peak list.",
      "topics": [
        "EvaluatePairsFromXCMSSet"
      ]
    },
    {
      "page": "GenerateCandXLSX",
      "title": "Generate a table for the candidates obtained in EvaluateCandidateListAgainstRawData.",
      "topics": [
        "GenerateCandXLSX"
      ]
    },
    {
      "page": "GenerateQCPlots",
      "title": "Generate quality control plots for mz pair candidates.",
      "topics": [
        "GenerateQCPlots"
      ]
    },
    {
      "page": "getMultipleBPC",
      "title": "Extract multiple ion chromatograms from mass spectrometry data.",
      "topics": [
        "getMultipleBPC"
      ]
    },
    {
      "page": "plotBPC",
      "title": "Plot base peak chromatograms for multiple high resolution masses in multiple samples.",
      "topics": [
        "plotBPC"
      ]
    },
    {
      "page": "plotMID",
      "title": "Plot a Mass Isotopomer Distribution (MID) for multiple samples.",
      "topics": [
        "plotMID"
      ]
    },
    {
      "page": "HiResTEC-data",
      "title": "Different example data files to be used in the help section of `HiResTEC` functions.",
      "topics": [
        "mz_shift_corrector",
        "raw",
        "res_list",
        "sam",
        "xcms_cand"
      ]
    }
  ],
  "_readme": "https://github.com/janlisec/hirestec/raw/HEAD/README.md",
  "_rundeps": [
    "CorrectOverloadedPeaks"
  ],
  "_vignettes": [
    {
      "source": "HiResTEC-workflow.Rmd",
      "filename": "HiResTEC-workflow.html",
      "title": "HiResTEC-workflow",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2025-02-24 08:01:45",
      "modified": "2025-09-17 14:47:00",
      "commits": 3
    }
  ],
  "_score": 4.477121254719663,
  "_indexed": true,
  "_nocasepkg": "hirestec",
  "_universes": [
    "janlisec"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.63.2",
      "date": "2026-07-24T07:04:04.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/10824324a795eb479aa1839cd92476c57d071fdf719462124e18f5395ad7db07",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.63.2",
      "date": "2026-07-24T07:04:27.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/7c445af5b2625340ec5535973c1bfd94c1e884e69d1d4e0c6c2093fb420ab3fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.63.2",
      "date": "2026-07-24T07:04:10.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/cfa041bffdd40b13d780b1312cfc56e8a497333a7bd4b8aa48ba516f189af79c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.63.2",
      "date": "2026-07-24T07:04:28.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/6babef934698f0654554dfd851b4648b801ca3d3917245f9cd6f40e537490cd2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.63.2",
      "date": "2026-07-24T08:14:32.000Z",
      "arch": "aarch64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/3d482a28ab8544a45ec943070678482a43b4215b89d1f5fa361695997acfe3d3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.63.2",
      "date": "2026-07-24T08:16:50.000Z",
      "arch": "x86_64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/79e2bae65143475b624713a1e5842082527c2f7aae9b4b37ea6b18b4b15685ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.63.2",
      "date": "2026-07-24T08:15:19.000Z",
      "arch": "aarch64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/c299f1ebb585ccad9c1ef4b114a83966cf6625a165393622a2749fa610e3dd36",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.63.2",
      "date": "2026-07-24T08:13:15.000Z",
      "arch": "x86_64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/9e41e946059cc3ad27e835b5e93bf0c72917c10d268814baa6ab042a6e0738e5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.63.2",
      "date": "2026-07-24T07:04:16.000Z",
      "arch": "emscripten",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/e137aef9c1c4b5361b50df18e40f5ab3c326455b9969d33d48d42256fe31e261",
      "status": "success",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.63.2",
      "date": "2026-07-24T07:03:17.000Z",
      "arch": "x86_64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/4d537de108196d324feb278d8f020b1986fc7c8600fa35c65989ebce35dc4176",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.63.2",
      "date": "2026-07-24T07:03:22.000Z",
      "arch": "x86_64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/ac842e0e02fe646c0697be317b7123424cd1dc8fac9ea7874df1ce67e281277c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.63.2",
      "date": "2026-07-24T07:03:30.000Z",
      "arch": "x86_64",
      "commit": "e9fc805c2d820361b0eec0ab31a924795c11e03e",
      "fileid": "https://r2.ropensci.org/854bf2b320020c74bc7a5c216a3c34c05fc2d982e3751c1896461bf86f15aea5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/janlisec/actions/runs/30073939332"
    }
  ]
}